Francesco Edoardo Vallone

PhD Candidate · Computational Cancer Biology (Omics)

University of Turin · Functional Genomics Unit

Links

• Email
• GitHub
• ORCID
• ResearchGate

Software

A small, curated list of tools and templates I actually use and maintain.
Most research code stays private until publication; what’s public here is meant to be runnable and representative.

Featured

• TranscripTools (R) — helpers for bulk RNA-seq downstream work (DE result handling, exploratory plots, reporting utilities).
  Repo: https://github.com/Francesco-E-Vallone/TranscripTools

Apps / templates

• RNAseq-DB-explorer (R / Shiny) — local Shiny app to browse heterogeneous bulk RNA-seq datasets (runs locally; no server).
  Repo: https://github.com/Francesco-E-Vallone/RNAseq-DB-explorer

• RNAseq-alignment-quant — reproducible example pipeline (FASTQ → align/quant → counts), with clear inputs/outputs.
  Repo: https://github.com/Francesco-E-Vallone/RNAseq-alignment-quant

Small utilities

• script-archive — reusable snippets and one-off scripts not tied to a single project.
  Repo: https://github.com/Francesco-E-Vallone/script-archive